PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01431.30
Common NameJCGZ_21469, LOC105649572
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 163aa    MW: 17610.7 Da    PI: 10.1738
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01431.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.6e-20858256
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Jcr4S01431.30  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58
                   69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.50E-29866No hitNo description
PfamPF008472.7E-13857IPR001471AP2/ERF domain
PROSITE profilePS5103222.721865IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22866IPR016177DNA-binding domain
SMARTSM003803.1E-34871IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-32865IPR001471AP2/ERF domain
PRINTSPR003674.6E-11920IPR001471AP2/ERF domain
PRINTSPR003674.6E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA  60
KTNFPAPATA LSLDLNAPSD SHHRWSSTAS HRFALGEFLQ TGVFKEISFH GESSGSVKNE  120
SAVAGGGGSS VTPLPENGGQ PSFLGIVRRG LPIDLNEPPP LWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-22865563ATERF1
3gcc_A9e-22865563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8901233e-51KT890123.1 Corchorus olitorius cultivar Sudan Green microsatellite JROm798 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091650.11e-116PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID67e-50ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A067JE071e-116A0A067JE07_JATCU; Uncharacterized protein
STRINGVIT_10s0003g00130.t011e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-48ERF domain protein 12
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]